TY - JOUR
T1 - High-throughput screening of tribological properties of monolayer films using molecular dynamics and machine learning
AU - Quach, Co D.
AU - Gilmer, Justin B.
AU - Pert, Daniel
AU - Mason-Hogans, Akanke
AU - Iacovella, Christopher R.
AU - Cummings, Peter T.
AU - McCabe, Clare
N1 - Funding Information:
Funding for this work was provided by the National Science Foundation (NSF) through Grant No. OAC-1835874. A.M.-H. also acknowledges support from the National Science Foundation through Grant No. DMR-1852157. This research used resources provided by the Office of Science of the Department of Energy at the Oak Ridge Leadership Computing Facility operated under Contract No. DE-AC05-00OR22725 via an award from the INCITE program and the National Energy Research Scientific Computing Center (NERSC) operated under Contract No. DE-AC02-05CH11231.
Publisher Copyright:
© 2022 Author(s).
PY - 2022/4/21
Y1 - 2022/4/21
N2 - Monolayer films have shown promise as a lubricating layer to reduce friction and wear of mechanical devices with separations on the nanoscale. These films have a vast design space with many tunable properties that can affect their tribological effectiveness. For example, terminal group chemistry, film composition, and backbone chemistry can all lead to films with significantly different tribological properties. This design space, however, is very difficult to explore without a combinatorial approach and an automatable, reproducible, and extensible workflow to screen for promising candidate films. Using the Molecular Simulation Design Framework (MoSDeF), a combinatorial screening study was performed to explore 9747 unique monolayer films (116 964 total simulations) and a machine learning (ML) model using a random forest regressor, an ensemble learning technique, to explore the role of terminal group chemistry and its effect on tribological effectiveness. The most promising films were found to contain small terminal groups such as cyano and ethylene. The ML model was subsequently applied to screen terminal group candidates identified from the ChEMBL small molecule library. Approximately 193 131 unique film candidates were screened with approximately a five order of magnitude speed-up in analysis compared to simulation alone. The ML model was thus able to be used as a predictive tool to greatly speed up the initial screening of promising candidate films for future simulation studies, suggesting that computational screening in combination with ML can greatly increase the throughput in combinatorial approaches to generate in silico data and then train ML models in a controlled, self-consistent fashion.
AB - Monolayer films have shown promise as a lubricating layer to reduce friction and wear of mechanical devices with separations on the nanoscale. These films have a vast design space with many tunable properties that can affect their tribological effectiveness. For example, terminal group chemistry, film composition, and backbone chemistry can all lead to films with significantly different tribological properties. This design space, however, is very difficult to explore without a combinatorial approach and an automatable, reproducible, and extensible workflow to screen for promising candidate films. Using the Molecular Simulation Design Framework (MoSDeF), a combinatorial screening study was performed to explore 9747 unique monolayer films (116 964 total simulations) and a machine learning (ML) model using a random forest regressor, an ensemble learning technique, to explore the role of terminal group chemistry and its effect on tribological effectiveness. The most promising films were found to contain small terminal groups such as cyano and ethylene. The ML model was subsequently applied to screen terminal group candidates identified from the ChEMBL small molecule library. Approximately 193 131 unique film candidates were screened with approximately a five order of magnitude speed-up in analysis compared to simulation alone. The ML model was thus able to be used as a predictive tool to greatly speed up the initial screening of promising candidate films for future simulation studies, suggesting that computational screening in combination with ML can greatly increase the throughput in combinatorial approaches to generate in silico data and then train ML models in a controlled, self-consistent fashion.
KW - Friction
KW - High-Throughput Screening Assays
KW - Machine Learning
KW - Molecular Dynamics Simulation
UR - http://www.scopus.com/inward/record.url?scp=85128801815&partnerID=8YFLogxK
U2 - 10.1063/5.0080838
DO - 10.1063/5.0080838
M3 - Article
C2 - 35459321
SN - 0021-9606
VL - 156
JO - The Journal of Chemical Physics
JF - The Journal of Chemical Physics
IS - 15
M1 - 154902
ER -