Further progress towards a catalogue of all Arabidopsis genes: Analysis of a set of 5000 non-redundant ESTs

R Cooke; M Raynal; M Laudie; F Grellet; M Delseny; PC Morris; D Guerrier; J Giraudat; F Quigley; G Clabault; YF Li; R Mache; M Krivitzky; IJJ Gy; M Kreis; A Lecharny; Y Parmentier; J Marbach; J Fleck; B Clement; G Philipps; C Herve; C Bardet; D Tremousaygue; B Lescure; C Lacomme; D Roby; MF Jourjon; P Chabrier; JL Charpenteau; T Desprez; J Amselem; H Chiapello; H Hofte

doi:10.1046/j.1365-313X.1996.09010101.x

Further progress towards a catalogue of all Arabidopsis genes: Analysis of a set of 5000 non-redundant ESTs

R Cooke^*, M Raynal, M Laudie, F Grellet, M Delseny, PC Morris, D Guerrier, J Giraudat, F Quigley, G Clabault, YF Li, R Mache, M Krivitzky, IJJ Gy, M Kreis, A Lecharny, Y Parmentier, J Marbach, J Fleck, B ClementG Philipps, C Herve, C Bardet, D Tremousaygue, B Lescure, C Lacomme, D Roby, MF Jourjon, P Chabrier, JL Charpenteau, T Desprez, J Amselem, H Chiapello, H Hofte

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

178 Citations (Scopus)

Abstract

Nearly 7000 Arabidopsis thaliana-expressed sequence tags (ESTs) from 10 cDNA libraries have been sequenced, of which almost 5000 non-redundant tags have been submitted to the EMBL data bank. The quality of the cDNA libraries used is analysed. Similarity searches in international protein data banks have allowed the detection of significant similarities to a wide range of proteins from many organisms. Alignment with ESTs from the rice systematic sequencing project has allowed the detection of amino acid motifs which are conserved between the two organisms, thus identifying tags to genes encoding highly conserved proteins. These genes are candidates for a common framework in genome mapping projects in different plants.

Original language	English
Pages (from-to)	101-124
Number of pages	24
Journal	The Plant Journal
Volume	9
Issue number	1
DOIs	https://doi.org/10.1046/j.1365-313X.1996.09010101.x
Publication status	Published - Jan 1996

Keywords

GENOME
HUMAN BRAIN
THALIANA
DATABASE
REVEALS
EXPRESSED SEQUENCE TAGS
RFLP

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10.1046/j.1365-313X.1996.09010101.x

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Cooke, R., Raynal, M., Laudie, M., Grellet, F., Delseny, M., Morris, PC., Guerrier, D., Giraudat, J., Quigley, F., Clabault, G., Li, YF., Mache, R., Krivitzky, M., Gy, IJJ., Kreis, M., Lecharny, A., Parmentier, Y., Marbach, J., Fleck, J., ... Hofte, H. (1996). Further progress towards a catalogue of all Arabidopsis genes: Analysis of a set of 5000 non-redundant ESTs. The Plant Journal, 9(1), 101-124. https://doi.org/10.1046/j.1365-313X.1996.09010101.x

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title = "Further progress towards a catalogue of all Arabidopsis genes: Analysis of a set of 5000 non-redundant ESTs",

abstract = "Nearly 7000 Arabidopsis thaliana-expressed sequence tags (ESTs) from 10 cDNA libraries have been sequenced, of which almost 5000 non-redundant tags have been submitted to the EMBL data bank. The quality of the cDNA libraries used is analysed. Similarity searches in international protein data banks have allowed the detection of significant similarities to a wide range of proteins from many organisms. Alignment with ESTs from the rice systematic sequencing project has allowed the detection of amino acid motifs which are conserved between the two organisms, thus identifying tags to genes encoding highly conserved proteins. These genes are candidates for a common framework in genome mapping projects in different plants.",

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author = "R Cooke and M Raynal and M Laudie and F Grellet and M Delseny and PC Morris and D Guerrier and J Giraudat and F Quigley and G Clabault and YF Li and R Mache and M Krivitzky and IJJ Gy and M Kreis and A Lecharny and Y Parmentier and J Marbach and J Fleck and B Clement and G Philipps and C Herve and C Bardet and D Tremousaygue and B Lescure and C Lacomme and D Roby and MF Jourjon and P Chabrier and JL Charpenteau and T Desprez and J Amselem and H Chiapello and H Hofte",

year = "1996",

month = jan,

doi = "10.1046/j.1365-313X.1996.09010101.x",

language = "English",

volume = "9",

pages = "101--124",

journal = "The Plant Journal",

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Cooke, R, Raynal, M, Laudie, M, Grellet, F, Delseny, M, Morris, PC, Guerrier, D, Giraudat, J, Quigley, F, Clabault, G, Li, YF, Mache, R, Krivitzky, M, Gy, IJJ, Kreis, M, Lecharny, A, Parmentier, Y, Marbach, J, Fleck, J, Clement, B, Philipps, G, Herve, C, Bardet, C, Tremousaygue, D, Lescure, B, Lacomme, C, Roby, D, Jourjon, MF, Chabrier, P, Charpenteau, JL, Desprez, T, Amselem, J, Chiapello, H & Hofte, H 1996, 'Further progress towards a catalogue of all Arabidopsis genes: Analysis of a set of 5000 non-redundant ESTs', The Plant Journal, vol. 9, no. 1, pp. 101-124. https://doi.org/10.1046/j.1365-313X.1996.09010101.x

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AU - Cooke, R

AU - Raynal, M

AU - Laudie, M

AU - Grellet, F

AU - Delseny, M

AU - Morris, PC

AU - Guerrier, D

AU - Giraudat, J

AU - Quigley, F

AU - Clabault, G

AU - Li, YF

AU - Mache, R

AU - Krivitzky, M

AU - Gy, IJJ

AU - Kreis, M

AU - Lecharny, A

AU - Parmentier, Y

AU - Marbach, J

AU - Fleck, J

AU - Clement, B

AU - Philipps, G

AU - Herve, C

AU - Bardet, C

AU - Tremousaygue, D

AU - Lescure, B

AU - Lacomme, C

AU - Roby, D

AU - Jourjon, MF

AU - Chabrier, P

AU - Charpenteau, JL

AU - Desprez, T

AU - Amselem, J

AU - Chiapello, H

AU - Hofte, H

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N2 - Nearly 7000 Arabidopsis thaliana-expressed sequence tags (ESTs) from 10 cDNA libraries have been sequenced, of which almost 5000 non-redundant tags have been submitted to the EMBL data bank. The quality of the cDNA libraries used is analysed. Similarity searches in international protein data banks have allowed the detection of significant similarities to a wide range of proteins from many organisms. Alignment with ESTs from the rice systematic sequencing project has allowed the detection of amino acid motifs which are conserved between the two organisms, thus identifying tags to genes encoding highly conserved proteins. These genes are candidates for a common framework in genome mapping projects in different plants.

AB - Nearly 7000 Arabidopsis thaliana-expressed sequence tags (ESTs) from 10 cDNA libraries have been sequenced, of which almost 5000 non-redundant tags have been submitted to the EMBL data bank. The quality of the cDNA libraries used is analysed. Similarity searches in international protein data banks have allowed the detection of significant similarities to a wide range of proteins from many organisms. Alignment with ESTs from the rice systematic sequencing project has allowed the detection of amino acid motifs which are conserved between the two organisms, thus identifying tags to genes encoding highly conserved proteins. These genes are candidates for a common framework in genome mapping projects in different plants.

KW - GENOME

KW - HUMAN BRAIN

KW - THALIANA

KW - DATABASE

KW - REVEALS

KW - EXPRESSED SEQUENCE TAGS

KW - RFLP

U2 - 10.1046/j.1365-313X.1996.09010101.x

DO - 10.1046/j.1365-313X.1996.09010101.x

M3 - Article

SN - 0960-7412

VL - 9

SP - 101

EP - 124

JO - The Plant Journal

JF - The Plant Journal

IS - 1

ER -

Further progress towards a catalogue of all Arabidopsis genes: Analysis of a set of 5000 non-redundant ESTs

Abstract

Keywords

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