ELIXIR biovalidator for semantic validation of life science metadata

Isuru Liyanage; Tony Burdett; Bert Droesbeke; Karoly Erdos; Rolando Fernandez; Alasdair Gray; Muhammad Haseeb; Flavia Penim; Cyril Pommier; Philippe Rocca-Serra; Mélanie Courtot; Frederik Coppens

doi:10.1093/bioinformatics/btac195

ELIXIR biovalidator for semantic validation of life science metadata

Isuru Liyanage
, Tony Burdett
, Bert Droesbeke
, Karoly Erdos
, Rolando Fernandez
, Alasdair Gray
, Muhammad Haseeb
, Flavia Penim
, Cyril Pommier
, Philippe Rocca-Serra
, Mélanie Courtot
, Frederik Coppens

Research output: Contribution to journal › Article › peer-review

2 Citations (Scopus)

47 Downloads (Pure)

Abstract

To advance biomedical research, increasingly large amounts of complex data need to be discovered and integrated. This requires syntactic and semantic validation to ensure shared understanding of relevant entities. This article describes the ELIXIR biovalidator, which extends the syntactic validation of the widely used AJV library with ontology-based validation of JSON documents.

Original language	English
Pages (from-to)	3141-3142
Number of pages	2
Journal	Bioinformatics
Volume	38
Issue number	11
Early online date	5 Apr 2022
DOIs	https://doi.org/10.1093/bioinformatics/btac195
Publication status	Published - 1 Jun 2022

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title = "ELIXIR biovalidator for semantic validation of life science metadata",

abstract = "To advance biomedical research, increasingly large amounts of complex data need to be discovered and integrated. This requires syntactic and semantic validation to ensure shared understanding of relevant entities. This article describes the ELIXIR biovalidator, which extends the syntactic validation of the widely used AJV library with ontology-based validation of JSON documents.",

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note = "Funding Information: This work was supported by EMBL-EBI core funds; ELIXIR—the research infrastructure for life science data; and Research Foundation—Flanders (FWO) for ELIXIR Belgium [I002819N]. Publisher Copyright: {\textcopyright} The Author(s) 2022.",

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AU - Liyanage, Isuru

AU - Burdett, Tony

AU - Droesbeke, Bert

AU - Erdos, Karoly

AU - Fernandez, Rolando

AU - Gray, Alasdair

AU - Haseeb, Muhammad

AU - Penim, Flavia

AU - Pommier, Cyril

AU - Rocca-Serra, Philippe

AU - Courtot, Mélanie

AU - Coppens, Frederik

N1 - Funding Information: This work was supported by EMBL-EBI core funds; ELIXIR—the research infrastructure for life science data; and Research Foundation—Flanders (FWO) for ELIXIR Belgium [I002819N]. Publisher Copyright: © The Author(s) 2022.

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N2 - To advance biomedical research, increasingly large amounts of complex data need to be discovered and integrated. This requires syntactic and semantic validation to ensure shared understanding of relevant entities. This article describes the ELIXIR biovalidator, which extends the syntactic validation of the widely used AJV library with ontology-based validation of JSON documents.

AB - To advance biomedical research, increasingly large amounts of complex data need to be discovered and integrated. This requires syntactic and semantic validation to ensure shared understanding of relevant entities. This article describes the ELIXIR biovalidator, which extends the syntactic validation of the widely used AJV library with ontology-based validation of JSON documents.

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JO - Bioinformatics

JF - Bioinformatics

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ER -

ELIXIR biovalidator for semantic validation of life science metadata

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