An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature

Jonathan B L Bard, Matthew H Kaufman, Christophe Dubreuil, Renske M Brune, Albert Georg Burger, Richard A Baldock, Duncan R Davidson

Research output: Contribution to journalArticle

Abstract

This paper reports an internet-accessible database of mouse developmental anatomy (DMDA) that currently holds a hierarchy of the names and synonyms of the tissues in the first 22 Theiler stages of development (E1-E13.5), together with other appropriate information. The purposes of the database are to provide, first, a nomenclature for analyzing normal and mutant mouse anatomy, and second, a language for inputting, storing and querying gene-expression and other spatially organized data. DMDA currently contains some 6900 named and staged tissues (e.g. 360 and 1161 tissues in Theiler stage (TS) 14 (E9) and TS22 (E13.5) embryos). DMDA will be extended to include further lineage and other data when it becomes available. The database can be interactively accessed over the internet using either a Java or a non-Java WWW browser at http://genex.hgu.mrc.ac.uk/.

Original languageEnglish
Pages (from-to)111-120
Number of pages10
JournalMechanisms of Development
Volume74
Issue number1-2
DOIs
Publication statusPublished - Jun 1998

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Terminology
Internet
Anatomy
Databases
Names
Language
Embryonic Structures
Gene Expression

Keywords

  • Anatomical database
  • Bioinformatics
  • Database
  • Mouse anatomy
  • Mouse development

Cite this

Bard, J. B. L., Kaufman, M. H., Dubreuil, C., Brune, R. M., Burger, A. G., Baldock, R. A., & Davidson, D. R. (1998). An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature. Mechanisms of Development, 74(1-2), 111-120. https://doi.org/10.1016/S0925-4773(98)00069-0
Bard, Jonathan B L ; Kaufman, Matthew H ; Dubreuil, Christophe ; Brune, Renske M ; Burger, Albert Georg ; Baldock, Richard A ; Davidson, Duncan R. / An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature. In: Mechanisms of Development. 1998 ; Vol. 74, No. 1-2. pp. 111-120.
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An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature. / Bard, Jonathan B L; Kaufman, Matthew H; Dubreuil, Christophe; Brune, Renske M; Burger, Albert Georg; Baldock, Richard A; Davidson, Duncan R.

In: Mechanisms of Development, Vol. 74, No. 1-2, 06.1998, p. 111-120.

Research output: Contribution to journalArticle

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