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Research Output 2005 2019

2019

A deep learning approach for slice to volume biomedical image integration

Almogadwy, B., McLeod, K. & Burger, A., 29 May 2019, ICBBT'19 Proceedings of the 2019 11th International Conference on Bioinformatics and Biomedical Technology. ACM, p. 62-68 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Image registration
Medical imaging
Neural networks
Medical applications
Computer vision
2018

A Visual Analytics Technique for Exploring Gene Expression in the Developing Mouse Embryo

Andrews, S. & McLeod, K., 20 May 2018, Graph-Based Representation and Reasoning: 23rd International Conference on Conceptual Structures, ICCS 2018. Chapman, P., Endres, D. & Pernelle, N. (eds.). Springer, p. 137-151 15 p. (Lecture Notes in Artificial Intelligence; vol. 10872).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File
Visual Analytics
Embryo
Gene expression
Gene Expression
Mouse
2017

The ‘straight mouse’: defining anatomical axes in 3D embryo models

Armit, C., Hill, B., Venkataraman, S., McLeod, K., Burger, A. G. & Baldock, R., 11 Mar 2017, In : Database. 2017, 1, bax010.

Research output: Contribution to journalArticle

Open Access
File
2016

PhenoImageShare: An image annotation and query infrastructure

Adebayo, S., McLeod, K., Tudose, I., Osumi-Sutherland, D., Burdett, T., Baldock, R., Burger, A. G. & Parkinson, H., 7 Jun 2016, In : Journal of Biomedical Semantics. 7, 35.

Research output: Contribution to journalArticle

Open Access
File
Semantics
infrastructure
Ontology
image analysis
Technology

PhenoImageShare: An image annotation and query infrastructure

Burger, A. G., Baldock, R., Adebayo, S., Tudose, I., McLeod, K., Osumi-Sutherland, D., Parkinson, H. & Burdett, T., 7 Jun 2016, In : Journal of Biomedical Semantics. 7, 35.

Research output: Contribution to journalArticle

Open Access
File
Semantics
infrastructure
Ontology
image analysis
Technology
2015

PhenoImageShare: An image annotation and query infrastructure

Adebayo, S., McLeod, K., Tudose, I., Osumi-Sutherland, D., Baldock, R., Burger, A. G. & Parkinson, H., 11 Jul 2015, p. 20-23. 4 p.

Research output: Contribution to conferencePaper

Open Access
File
Servers
Throughput
Imaging techniques

PhenoImageShare: a phenotype image annotation, sharing and discovery platform

McLeod, K., Burger, A. G., Adebayo, S., Baldock, R., Tudose, I., Koscielny, G. & Parkinson, H., 27 Mar 2015, p. 17. 1 p.

Research output: Contribution to conferenceAbstract

Open Access
File

Using controlled language to query atlas space

McLeod, K., Hill, B., Armit, C., Adebayo, S., Baldock, R. & Burger, A., 2015, In : CEUR Workshop Proceedings. 1546, p. 197-198 2 p.

Research output: Contribution to journalConference article

Ontology
Gene expression
User interfaces
2013

A conceptual approach to gene expression analysis enhanced by visual analytics

Melo, C., Aufaure, M., Orphanides, C., Andrews, S., Mcleod, K. & Burger, A., 2013, p. 1314-1319.

Research output: Contribution to conferenceOther

Gene expression
Formal concept analysis
Genes
Semantics

Gene co-expression in mouse embryo tissues

Andrews, S. & McLeod, K., 2013, In : International Journal of Intelligent Information Technologies. 9, 4, p. 55-68 14 p.

Research output: Contribution to journalArticle

Semantic visualisation of gene expression information

Taylor, A., McLeod, K. & Burger, A., 2013, In : CEUR Workshop Proceedings. 1040, p. 10-20 11 p.

Research output: Contribution to journalConference article

Gene expression
Navigation
Visualization
Semantics
Experiments

Towards the semantic representation of biological images: from pixels to regions

McLeod, K., Iskandar, D. N. F. A. & Burger, A. G., 2013, In : International Journal of Intelligent Information Technologies. 9, 4, p. 35-54 20 p.

Research output: Contribution to journalArticle

Pixels
Semantics
2012

Argudas: lessons for argumentation in biology based on a gene expression use case

McLeod, K., Ferguson, G. & Burger, A., 2012, In : BMC Bioinformatics. 13 , Suppl 1, p. S8

Research output: Contribution to journalArticle

Gene Expression
In Situ Hybridization
Databases
Genes
Biota
2011

Gene co-expression in mouse embryo tissues

Andrews, S. & McLeod, K., 14 Jul 2011, Proceedings of the 1st CUBIST (Combining and Uniting Business Intelligence with Semantic Technologies) Workshop 2011. Dau, F. (ed.). Dresden, p. 1-10

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File
Gene expression
Visualization
Genes
Tissue
2010

Argudas: arguing with gene expression information

McLeod, K., Ferguson, G. & Burger, A., 7 Dec 2010, Proceedings of the 3rd International Workshop on Semantic Web Applications and Tools for the Life Sciences, Berlin,Germany, December 8-10, 2010. Paschke, A., Burger, A., Splendiani, A., Marshall, M. S. & Romano, P. (eds.).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File
gene expression
in situ hybridization
biologists
Biological Sciences
genes
2009

Knowledge-driven enhancements for task composition in bioinformatics

Sutherland, K., McLeod, K., Ferguson, G. & Burger, A., 1 Oct 2009, In : BMC Bioinformatics. 10, SUPPL. 10, p. S12 1471.

Research output: Contribution to journalArticle

Bioinformatics
Web services
Websites
Chemical analysis
Semantics

Using argumentation to resolve conflict in biological databases

McLeod, K., Ferguson, G. & Burger, A. G., 13 Jul 2009.

Research output: Contribution to conferencePaper

Open Access
File
experiment
conflict
evaluation
2008

Semantically linking web pages to web services in bioinformatics

Sutherland, K., McLeod, K. & Burger, A. G., 9 Sep 2008.

Research output: Contribution to conferencePaper

Open Access
File
Bioinformatics
Web services
Websites
Semantics
Semantic Web

Towards the use of argumentation in bioinformatics: A gene expression case study

McLeod, K. & Burger, A., Jul 2008, In : Bioinformatics. 24, 13, p. i304-i312

Research output: Contribution to journalArticle

Bioinformatics
Gene expression
Engines
2007
life science
resource
bioinformatics
method
2005

Extending the use of anatomy ontologies for cross-species data integration

Burger, A. G., Aitken, S., Ferguson, R., Luger, S., McLeod, K., Nutt, W., Webber, B. & Bard, J., Jul 2005.

Research output: Contribution to conferencePaper