Personal profile
Research interests
My primary research interest is distributed biomedical informatics systems, including the integration of data and computational biomedical models, particularly spatio-temporal data integration (biomedical atlases).
As part of my secondment to the MRC Human Genetics Unit I work on integration of the Edinburgh Mouse Atlas and similar spatio-temporal frameworks. A lot of this research includes biomedical ontologies, particularly anatomy ontologies.
Having mostly focused on the Life Sciences in the past, increasingly my research now crosses over into the medical domain (eHealth). Specifically, linking to spatio-temporal clinical data.
Working in an interdisciplinary field, my activities deal with the knowledge transfer of the latest computational techniques into usable tools for the biomedical end users. This is underpinned by Computer Science research, such as knowledge representation of biomedical data, reasoning over distributed resources and using argumentation systems for dealing with inconsistent biomedical data. Semantic Web technologies play a key role in my work
Biography
Following a BSc in Computer Science from the Fachhochschule Augsburg, Germany in 1988, I received a Fulbright Scholarship for the USA, where I then obtained an MSc in Computer Science from the University of Missouri-Kansas City in 1991. I received a PhD in Computer Science from the University of Edinburgh in 1996. I became a Lecturer in the Department of Computer Science at Heriot-Watt University in 1995 and a Senior Lecturer in 2004. Since 2001 I am also seconded part-time to the MRC Human Genetics Unit in Edinburgh as a Biomedical Informatics Scientist.
My research initially focused on distributed concurrency control algorithms, but following the completion of my PhD increasingly moved into Biomedical Informatics. At Heriot-Watt University I founded the Biomedical Informatics Systems Engineering Lab (BISEL) which I am now heading.
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 3 Good Health and Well-being
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Collaborations and top research areas from the last five years
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Crohn's lymphoid aggregates with endothelial clusters colocalise with submucosal fibrosis in fibrostenosing Crohn's disease
Glinka, M., Wickham, G. J., Nadalin, F., Kirkwood, K. J., Caldwell, H., Wicks, M., Hill, B., Houghton, D., Sharghi, M., Kefayat, A., Haggarty, B., Burger, A., Baldock, R. A., Adams, D. J., Papatheodorou, I., Bankhead, P., Din, S. & Arends, M. J., Apr 2026, In: Journal of Pathology. 268, 4, p. 398-412 15 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Downloads (Pure) -
FP27 Clinical and research data integration using a common coordinate framework for the gut
Burger, A., Houghton, D., Hill, B., Haggarty, B., Wicks, M. N., Glinka, M., Kirkwood, K., Adams, D., Papatheodorou, I., Din, S., Baldock, R. A. & Arends, M. J., 23 Jun 2025, In: Gut. 74, Suppl 1, p. A74 1 p.Research output: Contribution to journal › Meeting abstract
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Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas construction and usage
Börner, K., Blood, P. D., Silverstein, J. C., Ruffalo, M., Satija, R., Teichmann, S. A., Pryhuber, G. J., Misra, R. S., Purkerson, J. M., Fan, J., Hickey, J. W., Molla, G., Xu, C., Zhang, Y., Weber, G. M., Jain, Y., Qaurooni, D., Kong, Y., HRA Team & Burger, A. & 3 others, , Apr 2025, In: Nature Methods. 22, 4, p. 845-860 16 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile15 Link opens in a new tab Citations (Scopus)15 Downloads (Pure) -
P24 Layer-specific quantification of immune cells and fibrotic changes in fibrostenosing crohn’s disease
Glinka, M., Kirkwood, K. J., Caldwell, H., Wicks, M., Hill, B., Houghton, D., Sharghi, M., Nadalin, F., Kefayat, A., Haggerty, B., Burger, A., Baldock, R., Adams, D., Papatheodorou, I., Bankhead, P., Din, S. & Arends, M. J., 23 Jun 2025, In: Gut. 74, Suppl 1, p. A105-A106 2 p.Research output: Contribution to journal › Meeting abstract
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P320 The comparative pathology workbench: an integrated web-based tool for the interactive analysis of visual biomedical data
Wicks, M., Glinka, M., Hill, B., Houghton, D., Haggarty, B., Ferreira, I., Adams, D., Din, S., Papatheodorou, I., Kirkwood, K., Burger, A., Baldock, R. & Arends, M., 23 Jun 2025, In: Gut. 74, Suppl 1, p. A286-A287 2 p.Research output: Contribution to journal › Meeting abstract