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Research Output 2003 2019

2019

Data Quality Issues in Current Nanopublications

Asif, I., Chen-Burger, J. & Gray, A. J. G., 29 Jul 2019, (Accepted/In press) 2019 IEEE 15th International Conference on e-Science (e-Science). IEEE

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File

Generating corrupted data sources for the evaluation of matching systems

McNeill, F., Bental, D., Gray, A. J. G., Jedrzejczyk, S. & Alsadeeqi, A., 25 Jul 2019, (Accepted/In press) The Fourteenth International Workshop on Ontology Matching.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ontology
Computer systems

SARA - A Semantic Access Point Resource Allocation Service for Heterogenous Wireless Networks

Zhou, Q., Gray, A. J. G., Pezaros, D. & McLaughlin, S., 13 Jun 2019, 2019 Wireless Days (WD). IEEE, 8734260

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File
Resource allocation
Wireless networks
Semantics
Network management
Knowledge based systems

ToCo: An Ontology for Representing Hybrid Telecommunication Networks

Zhou, Q., Gray, A. J. G. & McLaughlin, S., 25 May 2019, The Semantic Web: ESWC 2019. Springer, p. 507-522 16 p. (Lecture Notes in Computer Science; vol. 11503).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File
Telecommunication networks
Ontology
Demonstrations
2018

An Ontology-Based Data Integration Framework for Construction Information Management

Akinyemi, A. G., Sun, M. & Gray, A. J. G., Jun 2018, In : Proceedings of the ICE - Management, Procurement and Law. 171, 3, p. 111-125 15 p.

Research output: Contribution to journalArticle

Open Access
File
Data integration
Information management
Ontology
Semantic Web
Application programs

ReasoNet: Inferring Network Policies Using Ontologies

Rotsos, C., Farshad, A., King, D., Hutchison, D., Zhou, Q., Gray, A. J. G., Wang, C-X. & McLaughlin, S., 13 Sep 2018, 2018 4th IEEE Conference on Network Softwarization and Workshops (NetSoft). IEEE, p. 217-221 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File
Ontology
Data structures
Semantic Web
Quality of service
Switches

The IUPHAR/BPS Guide to PHARMACOLOGY in 2018: Updates and expansion to encompass the new Guide to IMMUNOPHARMACOLOGY

Harding, S. D., Sharman, J. L., Faccenda, E., Southan, C., Pawson, A. J., Ireland, S., Gray, A. J. G., Bruce, L., Alexander, S. P. H., Anderton, S., Bryant, C., Davenport, A. P., Doerig, C., Fabbro, D., Levi-Schaffer, F., Spedding, M. & Davies, J. A., 4 Jan 2018, In : Nucleic Acids Research. 46, D1, p. D1091–D1106 16 p.

Research output: Contribution to journalArticle

Open Access
File
Clinical Pharmacology
Pharmacology
Ligands
Immune System Phenomena
Drug Discovery

Using a Jupyter Notebook to perform a reproducible scientific analysis over semantic web sources

Gray, A. J. G., 28 Aug 2018, In : CEUR Workshop Proceedings. 2184, p. 12-24 13 p.

Research output: Contribution to journalConference article

Open Access
Semantic Web
2017

An Identifier Scheme for the Digitising Scotland Project

Akgün, Ö., Alsadeeqi, A., Christen, P., Dalton, T., Dearle, A., Dibben, C., Garrett, E., Gray, A. J. G., Kirby, G. & Reid, A., 2017, (Accepted/In press).

Research output: Contribution to conferenceAbstract

File

Bioschemas: From Potato Salad to Protein Annotation

Bioschemas Community, 2017, Proceedings of the ISWC 2017 Posters & Demonstrations and Industry Tracks. CEUR-WS, 4 p. (CEUR Workshop Proceedings; vol. 1963).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File
salads
potatoes
engines
tail
genes

Bioschemas.org

Goble, C., Jimenez, R. C., Gray, A. J. G., Beard, N., Profiti, G., Morrison, N. & Bioschemas Consortium, Jul 2017.

Research output: Contribution to conferencePoster

File
Biological Science Disciplines
Registries
Controlled Vocabulary
Plant Proteins
Licensure

Interoperability and FAIRness through a novel combination of Web technologies

Wilkinson, M. D., Verborgh, R., Olavo Bonino da Silva Santos, L., Clark, T., Swertz, M. A., Kelpin, F. D. L., Gray, A. J. G., Schultes, E. A., van Mulligen, E. M., Ciccarese, P., Kuzniar, A., Gavai, A., Thompson, M., Kaliyaperumal, R., Bolleman, J. T. & Dumontier, M., 24 Apr 2017, In : PeerJ Computer Science. 3, 34 p., e110.

Research output: Contribution to journalArticle

Open Access
File
Interoperability
Biodiversity
Spreadsheets
Metadata
Data structures

Lost Silence: An emergency response early detection service through continuous processing of telecommunication data streams

Zhou, Q., McLaughlin, S., Gray, A. J. G., Wu, S. & Wang, C., 2017, Joint Proceedings of WSP and WOMoCoE 2017. CEUR-WS, p. 33-47 15 p. (CEUR Workshop Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

File
Telecommunication systems
Telecommunication
Ships
Processing

Set the Controls for Planet Jupyter: Reproducible Research and Literate Administrative Social Science Data Analysis

Gayle, V., Playford, C., Connelly, R. & Gray, A. J. G., 2017, (Accepted/In press).

Research output: Contribution to conferenceAbstract

File
data analysis
social science
workflow
social scientist
documentation

Systematically corrupting data to assess data linkage quality

Alsadeeqi, A. & Gray, A. J. G., May 2017.

Research output: Contribution to conferenceAbstract

Coffee
Optical character recognition
Hazardous materials spills
Transcription
Fires

Systematically corrupting data to assess data linkage quality

Alsadeeqi, A., Gray, A. J. G., Christen, P., Akgün, Ö. & Dalton, T., 2017, (Accepted/In press).

Research output: Contribution to conferenceAbstract

File
Optical character recognition
Transcription
Fires
2016

Administrative Social Science Data: The challenge of reproducible research

Playford, C., Gayle, V., Connelly, R. & Gray, A. J. G., 1 Dec 2016, In : Big Data & Society. 3, 2

Research output: Contribution to journalArticle

Open Access
File
social science
micro level
workflow
computer science
resources

Comment: The FAIR Guiding Principles for scientific data management and stewardship

Wilkinson, M. D., Dumontier, M., Aalbersberg, I. J., Appleton, G., Axton, M., Baak, A., Blomberg, N., Boiten, J-W., da Silva Santos, L. B., Bourne, P. E., Bouwman, J., Brookes, A. J., Clark, T., Crosas, M., Dillo, I., Dumon, O., Edmunds, S., Evelo, C. T., Finkers, R., Gonzalez-Beltran, A. & 33 othersGray, A. J. G., Groth, P., Goble, C., Grethe, J. S., Heringa, J., 't Hoen, P. A. C., Hooft, R., Kuhn, T., Kok, R., Kok, J., Lusher, S. J., Martone, M. E., Mons, A., Packer, A. L., Persson, B., Rocca-Serra, P., Roos, M., van Schaik, R., Sansone, S-A., Schultes, E., Sengstag, T., Slater, T., Strawn, G., Swertz, M. A., Thompson, M., van der Lei, J., van Mulligen, E., Velterop, J., Waagmeester, A., Wittenburg, P., Wolstencroft, K., Zhao, J. & Mons, B., 15 Mar 2016, In : Scientific Data. 3, 160018.

Research output: Contribution to journalArticle

Open Access
File
Reusability
Data Management
Information management
management
Reuse

The FAIR Guiding Principles for scientific data management and stewardship

Wilkinson, M. D., Dumontier, M., Aalbersberg, I. J., Appleton, G., Axton, M., Baak, A., Blomberg, N., Boiten, J-W., da Silva Santos, L. B., Bourne, P. E., Bouwman, J., Brookes, A. J., Clark, T., Crosas, M., Dillo, I., Dumon, O., Edmunds, S., Evelo, C. T., Finkers, R., Gonzalez-Beltran, A. & 33 othersGray, A. J. G., Groth, P., Goble, C. A., Grethe, J. S., Heringa, J., 't Hoen, P. A. C., Hooft, R., Kuhn, T., Kok, R., Kok, J., Lusher, S. J., Martone, M., Mons, A., Packer, A. L., Persson, B., Rocca-Serra, P., Roos, M., van Schaik, R., Sansone, S-A., Schultes, E., Sengstag, T., Slater, T., Strawn, G., Swertz, M. A., Thompson, M., van der Lei, J., van Mulligen, E., Velterop, J., Waagmeester, A., Wittenburg, P., Wolstencroft, K., Zhao, J. & Mons, B., 15 Mar 2016, In : Scientific Data. 3, 160018.

Research output: Contribution to journalArticle

Open Access
File
management
funding
stakeholder
infrastructure
industry

The health care and life sciences community profile for dataset descriptions

Dumontier, M., Gray, A. J. G., Marshall, M. S., Alexiev, V., Ansell, P., Bader, G., Baran, J., Bolleman, J. T., Callahan, A., Cruz-Toledo, J., Gaudet, P., Gombocz, E. A., Gonzalez-Beltran, A., Groth, P., Haendel, M., Ito, M., Jupp, S., Juty, N., Katayama, T., Kobayashi, N. & 10 othersKrishnaswami, K., Laibe, C., Le Novère, N., Lin, S., Malone, J., Miller, M., Mungall, C. J., Rietveld, L., Wimalaratne, S. M. & Yamaguchi, A., 16 Aug 2016, In : PeerJ. 4, e2331.

Research output: Contribution to journalArticle

Open Access
File
Metadata
Health care
Semantic Web

The Semantic Web - ISWC 2016: 15th International Semantic Web Conference, Kobe, Japan, October 17–21, 2016, Proceedings, Part II

Groth, P. (ed.), Simperl, E. (ed.), Gray, A. J. G. (ed.), Sabou, M. (ed.), Krötzsch, M. (ed.), Lecue, F. (ed.), Flöck, F. (ed.) & Gil, Y. (ed.), 2016, 1 ed. Springer International Publishing. (Lecture Notes in Computer Science; vol. 9982)

Research output: Book/ReportBook

The Semantic Web - ISWC 2016: 15th International Semantic Web Conference, Kobe, Japan, October 17–21, 2016, Proceedings, Part I

Groth, P. (ed.), Simperl, E. (ed.), Gray, A. J. G. (ed.), Sabou, M. (ed.), Krötzsch, M. (ed.), Lecue, F. (ed.), Flöck, F. (ed.) & Gil, Y. (ed.), 2016, 1 ed. Springer International Publishing. (Lecture Notes in Computer Science; vol. 9981)

Research output: Book/ReportBook

2015

Community-Based Guidelines for Describing Biomedical Datasets

W3C HCLS Interest Group, 11 Jul 2015. 1 p.

Research output: Contribution to conferencePaper

Open Access
File
Metadata
Semantic Web
Health care

Dataset Descriptions: HCLS Community Profile

Gray, A. J. G. (ed.), Baran, J. (ed.), Marshall, M. S. (ed.), Dumontier, M. (ed.), Alexiev, V., Ansell, P., Bader, G., Bando, A., Bolleman, J. T., Callahan, A., Cruz-Toledo, J., Gaudet, P., Gombocz, E. A., Gonzalez-Beltran, A., Groth, P., Haendel, M., Ito, M., Jupp, S., Juty, N., Katayama, T. & 11 othersKobayashi, N., Krishnaswami, K., Laibe, C., Le Novère, N., Lin, S., Malone, J., Miller, M., Mungall, C. J., Rietveld, L., Wimalaratne, S. M. & Yamaguchi, A., 14 May 2015, World Wide Web Consortium. (W3C Interest Group Note)

Research output: Book/ReportCommissioned report

Open Access
life science
metadata
health care
provenance
stakeholder

Validata: An online tool for testing RDF data conformance

Baungard Hansen, J., Beveridge, A., Farmer, R., Gehrmann, L., Gray, A. J. G., Khutan, S., Robertson, T. & Val, J., Dec 2015.

Research output: Contribution to conferencePaper

Open Access
File
Testing
Electronic data interchange
2014

A framework for evaluating and utilizing medical terminology mappings

Hussain, S., Sun, H., Sinaci, A., Erturkmen, G. B. L., Mead, C., Gray, A. J. G., Mcguinness, D., Prud'hommeaux, E., Daniel, C. & Forsberg, K., 2014, Proceedings of MIE2014. Vol. 205. p. 594-598 5 p. (Studies in Health Technology and Informatics ; vol. 205).

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Terminology
Telemedicine
Outcome Assessment (Health Care)

API-centric linked data integration: the Open PHACTS discovery platform case study

Groth, P., Loizou, A., Gray, A. J. G., Goble, C., Harland, L. & Pettifer, S., Dec 2014, In : Journal of Biomedical Semantics. 29, p. 12-18 7 p.

Research output: Contribution to journalArticle

Data integration
Application programming interfaces (API)

Applying linked data approaches to pharmacology: architectural decisions and implementation

Gray, A. J. G., Groth, P., Loizou, A., Askjaer, S., Brenninkmeijer, C. Y. A., Burger, K., Chichester, C., Evelo, C. T., Goble, C., Harland, L., Pettifer, S., Thompson, M., Waagmeester, A. & Williams, A. J., 2014, In : Semantic Web. 5, 2, p. 101-113

Research output: Contribution to journalArticle

Drug products
Medicine
Industry
Drug Discovery

Bring your own data workshops: A mechanism to aid data owners to comply with Linked Data best practices

Roos, M., Gray, A. J. G., Waagmeester, A., Thompson, M., Kaliyaperumal, R., Van Der Horst, E., Mons, B. & Wilkinson, M. D., 1 Jan 2014, In : CEUR Workshop Proceedings. 1320

Research output: Contribution to journalConference article

Engineers

Capturing provenance for a linkset of convenience

Jupp, S., Malone, J. & Gray, A. J. G., 19 Oct 2014, Proceedings of the 4th Workshop on Linked Science 2014 - Making Sense Out of Data (LISC2014). CEUR-WS, p. 71-75 5 p. (CEUR Workshop Proceedings; vol. 1282).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File
Data integration
Genes
Proteins

Dataset Descriptions for Linked Data Systems

Gray, A. J. G., 2014, In : IEEE Internet Computing. 18, 4, p. 66-69 4 p.

Research output: Contribution to journalArticle

Help me describe my data: A demonstration of the open PHACTS VoID Editor

Goble, C., Gray, A. J. G. & Tatakis, E., 20 Oct 2014, CEUR Workshop Proceedings: ISWC 2014 Posters and Demonstrations Track, ISWC-P and D 2014, A Track within the 13th International Semantic Web Conference, ISWC 2014; Riva del Garda; Italy; 21 October 2014. CEUR-WS, Vol. 272. p. 29-32 4 p. (CEUR Workshop Proceedings; vol. 1272).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Application programs
Demonstrations

Help me describe my data: A demonstration of the Open PHACTS VoID Editor

Goble, C., Gray, A. J. G. & Tatakis, E., Oct 2014.

Research output: Contribution to conferencePaper

Open Access
File
Application programs
Demonstrations

Scientific lenses to support multiple views over linked chemistry data

Batchelor, C., Brenninkmeijer, C. Y. A., Chichester, C., Davies, M., Digles, D., Dunlop, I., Evelo, C. T., Gaulton, A., Goble, C., Gray, A., Groth, P., Harland, L., Karapetyan, K., Loizou, A., Overington, J., Pettifer, S., steele, J., Stevens, R., Tkachenko, V., Waagmeester, A. & 2 othersWilliams, A. J. & Willighagen, E., 2014, The Semantic Web - ISWC 2014: 13th International Semantic Web Conference, Riva del Garda, Italy, October 19-23, 2014. Proceedings, Part I. p. 98-113

Research output: Chapter in Book/Report/Conference proceedingConference contribution

drug
public
chemical structure
chemical

SensorBench: Benchmarking approaches to processing wireless sensor network data

Galpin, I., Stokes, A. B., Valkanas, G., Gray, A. J. G., Paton, N. W., Fernandes, A. A. A., Sattler, K. U. & Gunopulos, D., 2014, ACM International Conference Proceeding Series. ACM, 21

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Benchmarking
Wireless sensor networks
Processing
Sensor nodes
Agriculture
2013

Computing identity co-reference across drug discovery datasets

Brenninkmeijer, C. Y. A., Dunlop, I., Goble, C., Gray, A. J. G., Pettifer, S. & Stevens, R., 2013, Proceedings of the 6th International Workshop on Semantic Web Applications and Tools for Life Sciences. Vol. 1114.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File
Data integration
Drug Discovery

Declarative in-network sensor data analysis

Valkanas, G., Galpin, I., Gray, A. J. G., Fernandes, A. A. A., Paton, N. W. & Gunopulos, D., 2013.

Research output: Contribution to conferencePaper

Query processing
Sensor networks
Data mining
Query languages
Engines

Including Co-referent URIs in a SPARQL Query

Brenninkmeijer, C. Y. A., Goble, C., Gray, A. J. G., Groth, P., Loizou, A. & Pettifer, S., 2013.

Research output: Contribution to conferencePaper

Open Access
File
Data integration
Costs

Incorporating commercial and private data into an open linked data platform for drug discovery

Goble, C., Gray, A. J. G., Harland, L., Karapetyan, K., Loizou, A., Mikhailov, I., Rankka, Y., Senger, S., Tkachenko, V., Williams, A. J. & Willighagen, E. L., 2013, Incorporating commercial and private data into an open linked data platform for drug discovery. Springer, Vol. 8219. p. 65-80 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8219 LNCS).

Research output: Chapter in Book/Report/Conference proceedingChapter

Access control
Drug products
Industry
Drug Discovery

Open PHACTS: Meaningful linking of preclinical drug discovery knowledge

Willighagen, E. L., Brenninkmeijer, C., Evelo, C. T., Harland, L., Gray, A. J. G., Goble, C., Waagmeester, A. & Williams, A. J., 7 Apr 2013, In : Abstracts of Papers: American Chemical Society Meetings. 245, 1 p.

Research output: Contribution to journalMeeting abstract

Open PHACTS explorer bringing the web to the semantic web

Dunlop, I., Ramgolam, R., Pettifer, S., Gray, A. J. G., Eales, J., Goble, C. & Velterop, J., 2013, CEUR Workshop Proceedings : 6th International Workshop on Semantic Web Applications and Tools for Life Sciences. Vol. 1114. (CEUR Workshop Proceedings; vol. 1114).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantic Web
Application programming interfaces (API)
Drug Discovery

PAV ontology: provenance, authoring and versioning

Ciccarese, P., Soiland-Reyes, S., Belhajjame, K., Gray, A. J. G., Goble, C. & Clark, T., 2013, In : Journal of Biomedical Semantics. 4, 37, 22 p., 37.

Research output: Contribution to journalArticle

Open Access
File

Processing online crop disease warning information via sensor networks using ISA ontologies

Jackman, P., Gray, A. J. G., Brass, A., Stevens, R., Shi, M., Scuffell, D., Hammersley, S. & Grieve, B., 8 Oct 2013, In : Agricultural Engineering International: CIGR Journal. 15, 3, p. 243-251 9 p.

Research output: Contribution to journalArticle

crops
spores
information networks
early warning systems
endpoints
2012

Whither BNCOD? The future of database and information systems research

Gray, A. J. G., Mar 2012, Data Security and Security Data - 27th British National Conference on Databases, BNCOD 27, Revised Selected Papers. MacKinnon, L. M. (ed.). p. 3-6 4 p. (Lecture Notes in Computer Science including subseries Lecture Notes in Artificial Intelligence ; vol. 6121).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Database Systems
Information Systems
Information systems
Series
Range of data
2011

Advances in Databases: 28th British National Conference on Databases, BNCOD 28, Manchester, UK, July 12-14, 2011, Revised Selected Papers

Fernandes, A. A. A. (ed.), Gray, A. J. G. (ed.) & Belhajjame, K. (ed.), 2011, Springer. (Lecture Notes in Computer Science; vol. 7051)

Research output: Book/ReportBook

A semantically enabled service architecture for mashups over streaming and stored data

Gray, A. J. G., Garcia-Castro, R., Kyzirakos, K., Karpathiotakis, M., Calbimonte, J-P., Page, K., Sadler, J., Frazer, A., Galpin, I., Fernandes, A. A. A., Paton, N. W., Corcho, O., Koubarakis, M., De Roure, D., Martinez, K. & Gomez-Perez, A., 2011, The Semanic Web: Research and Applications: 8th Extended Semantic Web Conference, ESWC 2011, Heraklion, Crete, Greece, May 29 – June 2, 2011, Proceedings, Part II. Antoniou, G., Grobelnik, M., Simperl, E., Parsia, B., Plexousakis, D., DeLeenheer, P. & Pan, J. (eds.). Springer, p. 300-314 15 p. (Lecture Notes in Computer Science; vol. 6644).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

SNEE: a query processor for wireless sensor networks

Galpin, I., Brenninkmeijer, C. Y. A., Gray, A. J. G., Jabeen, F., Fernandes, A. A. A. & Paton, N. W., 1 Feb 2011, In : Distributed and Parallel Databases. 29, 1-2, p. 31-85 55 p.

Research output: Contribution to journalArticle

2010

Enabling ontology-based access to streaming data sources

Calbimonte, J-P., Corcho, O. & Gray, A. J. G., 2010, Proceedings of the 9th International Semantic Web Conference on The Semantic Web ISWC 2010. Patel Schneider, PF., Pan, Y., Hitzler, P., Mika, P., Zhang, L., Pan, JZ., Horrocks & Glimm, B. (eds.). BERLIN: Springer, Vol. 1. p. 96-111 16 p. (Lecture Notes in Computer Science; vol. 6496).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2007

Answering queries over incomplete data stream histories

Gray, A. J. G., Nutt, W. & Williams, M. H., 2007, In : International Journal of Web Information Systems. 3, 1/2, p. 41-60 20 p.

Research output: Contribution to journalArticle

2006

Sources of incompleteness in grid publishing

Gray, A. J. G., Nutt, W. & Williams, H., 2006, Flexible and Efficient Information Handling - Proceedings of 23rd British National Conference on Databases, BNCOD 23. Vol. LNCS 4042 . p. 94-101 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4042 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Grid computing